CESSHIV-1 database

General information on HIV-1 isolate

# 954

Accession number	AY612637
Name	PT2695
Subtype	G
Country	Portugal
Submitted to NCBI	2004
Patient	PT2695

AY612637 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Core poly(A) site

The primary sequence:

ctgggtctct cttgctagac cagatttgag cctgggagct ctctgactag caggggaacc cactgcttaa gcctcaataa agcttgcctt gagtgcttca agtagtgtgt gcccgtctgt tgtgtgactc tggtaa

Isolates with identical sequences of region:

AB231896(#737) AF196748(#1314) AY610983(#2043) FJ614945(#2362) FJ614964(#2386)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy