CESSHIV-1 database

General information on HIV-1 isolate

# 954

Accession number	AY612637
Name	PT2695
Subtype	G
Country	Portugal
Submitted to NCBI	2004
Patient	PT2695

AY612637 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagccgct tctcgcctgt actgggtctc tcttgctaga ccagatttga gcctgggagc tctctgacta gcaggggaac ccactgctta agcctcaata aagcttgcct tgagtgcttc aagtagtgt

Isolates with identical sequences of region:

AF196748(#1314) AF196757(#1321)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy