CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 3294
Accession number FJ614885
Name 08MHR1_4561s
Subtype02_AG
CountrySouth Korea
Sampling year 2008
PatientMHR

FJ614885 isolate has foldings of [Core poly(A) site] [USE, TAR, polyA] .

The region encompassing Core poly(A) site

The primary sequence:

ctgggtctct cttgctagac cagatttgag cctgggagct ctctgactag c-agggaaccc actgcttaag cctcaataaa gcttgccttg agtgctttaa gtagtgtgtg cccgtctgtt gtgtgactct ggtaa

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy