CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 3294
Accession number FJ614885
Name 08MHR1_4561s
Subtype02_AG
CountrySouth Korea
Sampling year 2008
PatientMHR

FJ614885 isolate has foldings of [Core poly(A) site] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagctgct tctcgcctgt actgggtctc tcttgctaga ccagatttga gcctgggagc tctctgacta gc-agggaacc cactgcttaa gcctcaataa agcttgcctt gagtgcttta agtagtgt

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012