CESSHIV-1 database

General information on HIV-1 isolate

# 2394

Accession number	FJ614975
Name	91KDS8_4172
Subtype	CRF02_AG
Country	South Korea
Sampling year	1991
Patient	KDS

FJ614975 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Core poly(A) site

The primary sequence:

ctgggtctct cttgctagac cagatttgag cctgggagct ctctgactag caaaggaacc cactgcttaa gcctcaataa agcttgcctt gagtgcttca agtagtgtgt gcccgtctgt tgtgtgactc tggtaa

Isolates with identical sequences of region:

FJ614960(#2383) FJ614966(#2388) FJ614973(#2392)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy