CESSHIV-1 database

General information on HIV-1 isolate

# 2388

Accession number	FJ614966
Name	08MHI4_4657
Subtype	CRF02_AG
Country	South Korea (Africa)
Sampling year	2008
Patient	MHI

FJ614966 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Core poly(A) site

The primary sequence:

ctgggtctct cttgctagac cagatttgag cctgggagct ctctgactag caaaggaacc cactgcttaa gcctcaataa agcttgcctt gagtgcttca agtagtgtgt gcccgtctgt tgtgtgactc tggtaa

Isolates with identical sequences of region:

FJ614960(#2383) FJ614973(#2392) FJ614975(#2394)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy