CESSHIV-1 database

General information on HIV-1 isolate

# 2388

Accession number	FJ614966
Name	08MHI4_4657
Subtype	CRF02_AG
Country	South Korea (Africa)
Sampling year	2008
Patient	MHI

FJ614966 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE region

The primary sequence:

gttggggagt ggctagccct cagacgctgc atataagcag ctgcttctcg cctgtactgg gtctctcttg ctagaccaga tttgagcctg ggagctctct gactagcaaa ggaacccact gcttaagcct caataaagct tgccttgagt gcttcaagta gtgt

Isolates with identical sequences of region:

FJ614960(#2383)

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing USE region

The primary sequence:

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy