CESSHIV-1 database

General information on HIV-1 isolate

# 2255

Accession number	EF370292
Name	06YJN1_2466s
Subtype	B
Country	South Korea
Sampling year	2006
Patient	YJN

EF370292 isolate has foldings of [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Complete poly(A) region

The primary sequence:

cgagccctca gatgctgcat aaaagcagct gctttttgcc tgtactgggt ctctctggtt agaccagatc tgagcctggg agctctctgg ctgactaggg aacccactgc ttaagcctca ataaagcttg ccttgagtgc tttaagtagt gtgtgcccgt ctagtgtgtg cccgtctgtt gtgtgactct ggtaa

Isolates with identical sequences of region:

EF370315(#2258)

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing Complete poly(A) region

The primary sequence:

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy