CESSHIV-1 database

General information on HIV-1 isolate

# 2255

Accession number	EF370292
Name	06YJN1_2466s
Subtype	B
Country	South Korea
Sampling year	2006
Patient	YJN

EF370292 isolate has foldings of [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing 227 nt 3' terminus

The primary sequence:

cgagccctca gatgctgcat aaaagcagct gctttttgcc tgtactgggt ctctctggtt agaccagatc tgagcctggg agctctctgg ctgactaggg aacccactgc ttaagcctca ataaagcttg ccttgagtgc tttaagtagt gtgtgcccgt ctagtgtgtg cccgtctgtt gtgtgactct ggtaactaga gatccctcag acacttttag tcagtgtgga aaatctctag ca

Isolates with identical sequences of region:

EF370315(#2258)

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing 227 nt 3' terminus

The primary sequence:

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy