CESSHIV-1 database

General information on HIV-1 isolate

# 2258

Accession number	EF370315
Name	01HJY12_2429s
Subtype	B
Country	South Korea
Sampling year	2001
Patient	HJY

EF370315 isolate has foldings of [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing 227 nt 3' terminus

The primary sequence:

cgagccctca gatgctgcat aaaagcagct gctttttgcc tgtactgggt ctctctggtt agaccagatc tgagcctggg agctctctgg ctgactaggg aacccactgc ttaagcctca ataaagcttg ccttgagtgc tttaagtagt gtgtgcccgt ctagtgtgtg cccgtctgtt gtgtgactct ggtaactaga gatccctcag acacttttag tcagtgtgga aaatctctag ca

Isolates with identical sequences of region:

EF370292(#2255)

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing 227 nt 3' terminus

The primary sequence:

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy