CESSHIV-1 database

General information on HIV-1 isolate

# 2258

Accession number	EF370315
Name	01HJY12_2429s
Subtype	B
Country	South Korea
Sampling year	2001
Patient	HJY

EF370315 isolate has foldings of [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagctgct ttttgcctgt actgggtctc tctggttaga ccagatctga gcctgggagc tctctggctg actagggaac ccactgctta agcctcaata aagcttgcct tgagtgcttt aagtagtgt

Isolates with identical sequences of region:

EF370244(#1721) EF370245(#2240) EF370246(#1725) EF370252(#2243) EF370292(#2255) EU047650(#1846) EU047651(#1847) EU047687(#1883) EU047688(#1884) L28916(#2484) U81474(#2579)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy