CESSHIV-1 database

General information on HIV-1 isolate

# 2253

Accession number	EF370285
Name	03YJN10a_2652s1
Subtype	B
Country	South Korea
Sampling year	2003
Patient	YJN

EF370285 isolate has foldings of [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing 227 nt 3' terminus

The primary sequence:

cgagccctca gatgctgcat aaaagcagct gctttttgcc tgtactgggt ctctctggtt agaccagatc tgagcctggg agctctctgg ctaactaggg aacccactgc ttaagcctca ataaagcttg ccttgagtgc tttaagtagt gtgtgcccgt ctgttgtgtg actctggtaa ctagagatcc ctcagaccct tttagtcggt gtggaaaatc tctagca

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing 227 nt 3' terminus

The primary sequence:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy