CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 3344
Accession number GU391337
Name 7R
Subtype
CountryIndia
Submitted to NCBI 2010

GU391337 isolate has foldings of [USE domain, TAR, polyA] [USE, TAR, polyA] .

The region encompassing USE domain, TAR, polyA

The primary sequence:

cgagccctca gatgctgcat ataagcagct gctttttgcc tgtactgggt ctctctggtt agaccagatc tgagcctggg -----------------------------------cctcaataaa gcttgccttg agtgctcaaa gtagtgt

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy