CESSHIV-1 database

General information on HIV-1 isolate

# 3344

Accession number	GU391337
Name	7R
Subtype
Country	India
Submitted to NCBI	2010

GU391337 isolate has foldings of [USE domain, TAR, polyA] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagctgct ttttgcctgt actgggtctc tctggttaga ccagatctga gcctggg-----------------------------------cct caataaagct tgccttgagt gctcaaagta gtgt

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy