CESSHIV-1 database

General information on HIV-1 isolate

# 3745

Accession number	M58188
Name	L1_16
Subtype	B
Country	France
Sampling year	1985
Patient	P1

M58188 isolate has foldings of [USE domain, TAR, polyA] [USE region] [USE, TAR, polyA] .

The region encompassing USE domain, TAR, polyA

The primary sequence:

cgagccctca gatgctgcat ataagcagct gcnttttgcc tgtactgggt ctctctggtt agaccagatc tgagcctggg agctctctgg ctaactaggg aacccactgc ttaagcctca ataaagcttg ccttgagtgc ttcaagtagt gt

Isolates with identical sequences of region:

M58177(#3736) M58189(#3746) M58213(#3768) M58239(#3794)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy