CESSHIV-1 database

General information on HIV-1 isolate

# 3794

Accession number	M58239
Name	V2_04
Subtype	B
Country	France
Sampling year	1986
Patient	P1

M58239 isolate has foldings of [USE domain, TAR, polyA] [USE region] [USE, TAR, polyA] .

The region encompassing USE domain, TAR, polyA

The primary sequence:

cgagccctca gatgctgcat ataagcagct gcnttttgcc tgtactgggt ctctctggtt agaccagatc tgagcctggg agctctctgg ctaactaggg aacccactgc ttaagcctca ataaagcttg ccttgagtgc ttcaagtagt gt

Isolates with identical sequences of region:

M58177(#3736) M58188(#3745) M58189(#3746) M58213(#3768)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy