CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 3585
Accession number AF102217
Name TN5614
SubtypeB
CountryTunisia
Submitted to NCBI 1998
Patient5614

AF102217 isolate has foldings of [USE domain, TAR, polyA] [USE region] [USE, TAR, polyA] .

The region encompassing USE region

The primary sequence:

actggggagt ggcgagccca cagatgttgc atataagcag ccgcttttcg cctgtgctgg gtctctctgg ttagaccaga tctgagcctg ggggctctct ggctgactag ggaacccact gcytaagcct caataaagct tgccttgagt gcttcaagta gtgt

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy