CESSHIV-1 database

General information on HIV-1 isolate

# 3585

Accession number	AF102217
Name	TN5614
Subtype	B
Country	Tunisia
Submitted to NCBI	1998
Patient	5614

AF102217 isolate has foldings of [USE domain, TAR, polyA] [USE region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagccgct tttcgcctgt gctgggtctc tctggttaga ccagatctga gcctgggggc tctctggctg actagggaac ccactgcyta agcctcaata aagcttgcct tgagtgcttc aagtagtgt

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy