CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 3588
Accession number AF102221
Name UG4696
SubtypeD
CountryUganda
Submitted to NCBI 1998
PatientUG4696

AF102221 isolate has foldings of [USE domain, TAR, polyA] [USE region] [USE, TAR, polyA] .

The region encompassing USE region

The primary sequence:

gactgggagt ggctaaccct cagatgctgc atataagcag ctgctttt-gc ctgtactggg tctctcttgt tagaccagat ttgagcctgg gagctctctg gctagctagg gaacccactg cttaagcctc aataaagctt gccttgagtt cttcaagtag tgt

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012