CESSHIV-1 database

General information on HIV-1 isolate

# 3588

Accession number	AF102221
Name	UG4696
Subtype	D
Country	Uganda
Submitted to NCBI	1998
Patient	UG4696

AF102221 isolate has foldings of [USE domain, TAR, polyA] [USE region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagctgct ttt-gcctgta ctgggtctct cttgttagac cagatttgag cctgggagct ctctggctag ctagggaacc cactgcttaa gcctcaataa agcttgcctt gagttcttca agtagtgt

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy