CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 3590
Accession number AF102223
Name UG6357
SubtypeD
CountryUganda
Submitted to NCBI 1998
PatientUG6357

AF102223 isolate has foldings of [USE domain, TAR, polyA] [USE region] [USE, TAR, polyA] .

The region encompassing USE region

The primary sequence:

actggg-agtg gctaaccctc agatgctgca tataagcagc tgctttttgc ctgtactggg tctctcttgt tagaccagat ttgagcccga gagctctctg gctagctagg gaacccactg cttaagcctc aataaagctt gccttgagtg cttcaagtag ngt

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012