CESSHIV-1 database

General information on HIV-1 isolate

# 3590

Accession number	AF102223
Name	UG6357
Subtype	D
Country	Uganda
Submitted to NCBI	1998
Patient	UG6357

AF102223 isolate has foldings of [USE domain, TAR, polyA] [USE region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagctgct ttttgcctgt actgggtctc tcttgttaga ccagatttga gcccgagagc tctctggcta gctagggaac ccactgctta agcctcaata aagcttgcct tgagtgcttc aagtagngt

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy