CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 2829
Accession number AY610986
Name 98SP7673
SubtypeC
CountrySpain (Equatorial Guinea)
Sampling year 1998

AY610986 isolate has foldings of [Core poly(A) site] [USE domain, TAR, polyA] [USE region] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE region

The primary sequence:

atcggggagt ggcca-ccctc agatgctgca tataagcagc tgcttttcgc ctgtactggg tctctctagg tagaccagat ttgagcctgg gagctctctg gctacttggg gaacccactg cttaagcctc aataaagctt gccttgagtg cttcaagtag tgt

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy