CESSHIV-1 database

General information on HIV-1 isolate

# 2829

Accession number	AY610986
Name	98SP7673
Subtype	C
Country	Spain (Equatorial Guinea)
Sampling year	1998

AY610986 isolate has foldings of [Core poly(A) site] [USE domain, TAR, polyA] [USE region] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagctgct tttcgcctgt actgggtctc tctaggtaga ccagatttga gcctgggagc tctctggcta cttggggaac ccactgctta agcctcaata aagcttgcct tgagtgcttc aagtagtgt

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy