CESSHIV-1 database

General information on HIV-1 isolate

# 3757

Accession number	M58201
Name	L3_07
Subtype	B
Country	France
Sampling year	1986
Patient	P1

M58201 isolate has foldings of [USE domain, TAR, polyA] [USE region] [USE, TAR, polyA] .

The region encompassing USE region

The primary sequence:

actggggagt ggcgagccct cagatgctgc atataagcag ctgcnttttg cctgtactgg gtctctctgg ttagaccaga tctgagcctg ggagctctct ggctagctag ggaacccact gcttaagcct caataaagct tgccttgagt gcttcaagta gtgt

Isolates with identical sequences of region:

M58202(#3758) M58216(#3771) M58226(#3781) M58234(#3789) M58283(#3838)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy