CESSHIV-1 database

General information on HIV-1 isolate

# 3781

Accession number	M58226
Name	L6_11
Subtype	B
Country	France
Sampling year	1989
Patient	P1

M58226 isolate has foldings of [USE domain, TAR, polyA] [USE region] [USE, TAR, polyA] .

The region encompassing USE region

The primary sequence:

actggggagt ggcgagccct cagatgctgc atataagcag ctgcnttttg cctgtactgg gtctctctgg ttagaccaga tctgagcctg ggagctctct ggctagctag ggaacccact gcttaagcct caataaagct tgccttgagt gcttcaagta gtgt

Isolates with identical sequences of region:

M58201(#3757) M58202(#3758) M58216(#3771) M58234(#3789) M58283(#3838)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy