CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 7
Accession number M93258
Name YU-2
SubtypeB
CountryUSA
Sampling year 1986
PatientYU

M93258 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE region

The primary sequence:

actggggagt ggcgagccct cagatgctgc atataagcag ctgctttt-gc ctgtactggg tctctctggt tagaccagat ctgagcctgg gagctctctg gctagctagg aaacccactg cttaagcctc aataaagctt gccttgagtg ctttaagtag tgt

Isolates with identical sequences of region:

M93259(#6)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012