CESSHIV-1 database

General information on HIV-1 isolate

# 7

Accession number	M93258
Name	YU-2
Subtype	B
Country	USA
Sampling year	1986
Patient	YU

M93258 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccctt ttagtcagtg tggaaaatct ctagcagtgg cgcccgaaca gggacttgaa agcgaaagga aaaccagagg agctctctcg acgcaggac

Isolates with identical sequences of region:

AF042100(#122) EU047603(#1623) M93259(#6)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy