CESSHIV-1 database

General information on HIV-1 isolate

# 1623

Accession number	EU047603
Name	98CSR10_3140
Subtype	B
Country	South Korea (USA)
Sampling year	1998
Patient	HP-21(CSR)

EU047603 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccctt ttagtcagtg tggaaaatct ctagcagtgg cgcccgaaca gggacttgaa agcgaaagga aaaccagagg agctctctcg acgcaggac

Isolates with identical sequences of region:

AF042100(#122) M93258(#7) M93259(#6)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy