CESSHIV-1 database

General information on HIV-1 isolate

# 122

Accession number	AF042100
Name	MBC200
Subtype	B
Country	Australia
Sampling year	1986
Patient	MBC200

AF042100 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccctt ttagtcagtg tggaaaatct ctagcagtgg cgcccgaaca gggacttgaa agcgaaagga aaaccagagg agctctctcg acgcaggac

Isolates with identical sequences of region:

EU047603(#1623) M93258(#7) M93259(#6)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy