CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 3076
Accession number U63537
Name Barbosa, TYGE3
SubtypeD
CountrySouth Africa (Mozambique)
Sampling year 1984
PatientBarbo

U63537 isolate has foldings of [USE domain, TAR, polyA] [USE region] [USE, TAR, polyA] .

The region encompassing USE region

The primary sequence:

actggggagt ggctaaccct cagatgctgc atataagcag ctgcttttcg cctgtactgg gtctctctgg ttggaccaga ttagagcctg ggagctctct ggctagctag ggaacccact gcttaagcct caaataaagc ttgccttgag tgcttaaagt agtgt

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy