CESSHIV-1 database

General information on HIV-1 isolate

# 871

Accession number	AB253693
Name	pJPDR1236AEC31
Subtype	CRF01_AE
Country	Japan
Submitted to NCBI	2006
Patient	1236

AB253693 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagccgct tttcgcttgt actgggtctc tcttgctaga ccaggtc-gag cccgggagct ctctggctag caggggaacc cactgcttaa agcctcaata aagcttgcct tgagtgctta aagtggtgt

Isolates with identical sequences of region:

AB253692(#870) AB253696(#874) AB253701(#879) AB253702(#880)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy