CESSHIV-1 database

General information on HIV-1 isolate

# 1974

Accession number	AF239652
Name	PAIR19_INFANT
Subtype	C
Country	Tanzania
Sampling year	1996
Patient	19-baby

AF239652 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagctgct tttcgcctgt actgggtctc tctaggtaga ccagatctga gcccgggagc tctctggcta tctagggaac ccactgctta agcctcaata aagcttgcct tgagtgctct aagtagtgt

Isolates with identical sequences of region:

AB191651(#1177) AB254149(#812) AF239654(#1976) AF411967(#238) AY228557(#310) AY921356(#2116)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy