CESSHIV-1 database

General information on HIV-1 isolate

# 238

Accession number	AF411967
Name	99ZACM9
Subtype	C
Country	South Africa
Sampling year	1999
Patient	CM9

AF411967 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagctgct tttcgcctgt actgggtctc tctaggtaga ccagatctga gcccgggagc tctctggcta tctagggaac ccactgctta agcctcaata aagcttgcct tgagtgctct aagtagtgt

Isolates with identical sequences of region:

AB191651(#1177) AB254149(#812) AF239652(#1974) AF239654(#1976) AY228557(#310) AY921356(#2116)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy