CESSHIV-1 database

General information on HIV-1 isolate

# 3454

Accession number	DQ287303
Name	C64_5_2000
Subtype	B
Country	Australia
Sampling year	2000
Patient	C64

DQ287303 isolate has foldings of [Core poly(A) site] [USE domain, TAR, polyA] [USE region] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagctgct ttctgcctgt actgagtctc tctggttaga ccagatatga gcctgggagc tctctggctg aactagggaa cccactgctt aagcctcaat aaagcttgcc ttgagtgctt caagtagtgt 

Isolates with identical sequences of region:

DQ287302(#3453)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy