CESSHIV-1 database

General information on HIV-1 isolate

# 3651

Accession number	DQ848485
Name	ie9
Subtype	B
Country	USA
Sampling year	1990
Patient	E-child

DQ848485 isolate has foldings of [USE domain, TAR, polyA] [USE region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagctgct ttttgcctgt acggggtctc tctggttaga ccagatctga gcctgggagc tctctggcta actagggaac ccactgctta agcctcaata aagcttgcct tgagtgcttc aagtagtgt

Isolates with identical sequences of region:

AY352275(#278) AY851674(#2095) AY851678(#2099) U80523(#2542)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy