CESSHIV-1 database

General information on HIV-1 isolate

# 2542

Accession number	U80523
Name	LTS20
Subtype	B
Country	Venezuela
Sampling year	1994
Patient	LTS20

U80523 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagctgct ttttgcctgt acggggtctc tctggttaga ccagatctga gcctgggagc tctctggcta actagggaac ccactgctta agcctcaata aagcttgcct tgagtgcttc aagtagtgt

Isolates with identical sequences of region:

AY352275(#278) AY851674(#2095) AY851678(#2099) DQ848485(#3651)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy