CESSHIV-1 database

General information on HIV-1 isolate

# 206

Accession number	AF443108
Name	00BW3819.3
Subtype	C
Country	Botswana
Sampling year	2000
Patient	38193

AF443108 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cactcggcaa gaggcgagag -cggcgactgg tgagtacgcc gattttattt gactagcgga ggctagaagg agaga

Isolates with identical sequences of region:

AY857060(#1636) GQ999991(#3381)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy