CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 1636
Accession number AY857060
Name 4972002
SubtypeC
CountryAustralia
Submitted to NCBI 2004
Patient4972002

AY857060 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cactcggcaa gaggcgagag -cggcgactgg tgagtacgcc gattttattt gactagcgga ggctagaagg agaga

Isolates with identical sequences of region:

AF443108(#206) GQ999991(#3381)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy