CESSHIV-1 database

General information on HIV-1 isolate

# 3381

Accession number	GQ999991
Name	CAP239_5w_F1
Subtype	C
Country	South Africa
Sampling year	2005
Patient	CAP239

GQ999991 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cactcggcaa gaggcgagag -cggcgactgg tgagtacgcc gattttattt gactagcgga ggctagaagg agaga

Isolates with identical sequences of region:

AF443108(#206) AY857060(#1636)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy