CESSHIV-1 database

General information on HIV-1 isolate

# 327

Accession number	AY463229
Name	C.ZA.1119MB
Subtype	C
Country	South Africa
Sampling year	2000
Patient	1119M

AY463229 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cactcggcaa gaggcgagag g-ggcggctgg tgagtacgcc aaattttatt tgactagcgg aggctagaag gagaga

Isolates with identical sequences of region:

AF110969(#135) DQ351226(#625) EU293446(#1206) EU293449(#1209)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy