CESSHIV-1 database

General information on HIV-1 isolate

# 625

Accession number	DQ351226
Name	03ZAPS025MB1
Subtype	C
Country	South Africa
Sampling year	2003
Patient	PS-025M

DQ351226 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cactcggcaa gaggcgagag g-ggcggctgg tgagtacgcc aaattttatt tgactagcgg aggctagaag gagaga

Isolates with identical sequences of region:

AF110969(#135) AY463229(#327) EU293446(#1206) EU293449(#1209)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy