CESSHIV-1 database

General information on HIV-1 isolate

# 573

Accession number	DQ085869
Name	BREPM11931
Subtype	BF1
Country	Brazil
Sampling year	1999
Patient	11931

DQ085869 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcacagcaa gaggcgaggg gcggcgactg gtgagtacgc caaaa-ttttg actagcggag gctagaagga gaga

Isolates with identical sequences of region:

AY173954(#247) DQ085870(#574) DQ487190(#725)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy