CESSHIV-1 database

General information on HIV-1 isolate

# 574

Accession number	DQ085870
Name	BREPM11932
Subtype	BF1
Country	Brazil
Sampling year	1999
Patient	11932

DQ085870 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcacagcaa gaggcgaggg gcggcgactg gtgagtacgc caaaa-ttttg actagcggag gctagaagga gaga

Isolates with identical sequences of region:

AY173954(#247) DQ085869(#573) DQ487190(#725)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy