CESSHIV-1 database

General information on HIV-1 isolate

# 725

Accession number	DQ487190
Name	WCM32P0793
Subtype	B
Country	USA
Sampling year	1993
Patient	mother

DQ487190 isolate has foldings of [DIS region] [PBS region] [123nt 3' terminus] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcacagcaa gaggcgaggg gcggcgactg gtgagtacgc caaaa-ttttg actagcggag gctagaagga gaga

Isolates with identical sequences of region:

AY173954(#247) DQ085869(#573) DQ085870(#574)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy