CESSHIV-1 database

General information on HIV-1 isolate

# 1220

Accession number	DQ275642
Name	03ZASK067B1
Subtype	C
Country	South Africa
Sampling year	2003
Patient	067B1

DQ275642 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaaagt gcactcggca agaggcgaga g-cggcggctg gtgagtacgc caattttatt tgactagcgg aggctagaag gagaga

Isolates with identical sequences of region:

AY901970(#433) DQ351238(#637) EF514713(#1022)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy