CESSHIV-1 database

General information on HIV-1 isolate

# 1022

Accession number	EF514713
Name	CTL 015
Subtype	C
Country	Denmark
Sampling year	2001
Patient	CTL-015

EF514713 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaaagt gcactcggca agaggcgaga g-cggcggctg gtgagtacgc caattttatt tgactagcgg aggctagaag gagaga

Isolates with identical sequences of region:

AY901970(#433) DQ275642(#1220) DQ351238(#637)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy