CESSHIV-1 database

General information on HIV-1 isolate

# 1427

Accession number	FJ864679
Name	PokA1Ru
Subtype	A1
Country	Russia
Sampling year	2008

FJ864679 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaggtg cacacagcaa gaggcgagag -cggcgactgg tgagtacgcc att--ttttgac tagcggaggc tagaaggaga ga

Isolates with identical sequences of region:

AB253421(#904) AB253422(#905) AB253429(#912) AY322193(#380) EU110096(#1041) U51190(#41)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy