CESSHIV-1 database

General information on HIV-1 isolate

# 1342

Accession number	AY860947
Name	CNHN24
Subtype	B
Country	China
Submitted to NCBI	2004
Patient	CNHN24

AY860947 isolate has foldings of [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing 123 nt 3' terminus

The primary sequence:

cactgcttaa gcctcaataa agcttgcctt gagtgcttca agtagtgtgt gcccgtctgt tgtgtgactc tggtaactag agatccctca gacccttt-ag tcagtgtgga aaatctctag ca

Isolates with identical sequences of region:

AY894352(#3301) EF057102(#981) EF370365(#1795)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy