CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 3301
Accession number AY894352
Name CNHN24
SubtypeB
CountryChina
Submitted to NCBI 2005
PatientCNHN24

AY894352 isolate has foldings of [123nt 3' terminus] .

The region encompassing 123 nt 3' terminus

The primary sequence:

cactgcttaa gcctcaataa agcttgcctt gagtgcttca agtagtgtgt gcccgtctgt tgtgtgactc tggtaactag agatccctca gacccttt-ag tcagtgtgga aaatctctag ca

Isolates with identical sequences of region:

AY860947(#1342) EF057102(#981) EF370365(#1795)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy